| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Banda Sea | Sea/Bay/Gulf | native | 846 |
| Central Indo-Pacific | sea/bay/gulf | native | 846 |
| Cocos-Keeling/Christmas Island | Sea/Bay/Gulf | native | 846 |
| Eastern Coral Triangle | sea/bay/gulf | native | 89710 |
| Indian Ocean | Sea/Bay/Gulf | native | 846 |
| Indonesian Sea | Sea/Bay/Gulf | native | 846 |
| Java Transitional | sea/bay/gulf | native | 846 |
| Lesser Sunda | Sea/Bay/Gulf | native | 846 |
| Lord Howe and Norfolk Islands | sea/bay/gulf | native | 846 |
| Lord Howe and Norfolk Islands - province | Sea/Bay/Gulf | native | 846 |
| New Caledonia | Sea/Bay/Gulf | native | 846 |
| Northern and Central Red Sea | Sea/Bay/Gulf | native | 846 |
| Pacific Ocean | Sea/Bay/Gulf | native | 846 |
| Red Sea | Sea/Bay/Gulf | native | 846 |
| Red Sea and Gulf of Aden | sea/bay/gulf | native | 846 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 89710 |
| South China Sea | Sea/Bay/Gulf | native | 846 |
| Southern Red Sea | Sea/Bay/Gulf | native | 846 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 846 |
| Sunda Shelf | sea/bay/gulf | native | 846 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 846 |
| Vanuatu | Sea/Bay/Gulf | native | 846 |
| West Philippine Sea | Sea/Bay/Gulf | native | 846 |
| Western Coral Triangle | sea/bay/gulf | native | 846 |
| Western Indo-Pacific | sea/bay/gulf | native | 846 |