| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 846 |
| Cargados Carajos/Tromelin Island | Sea/Bay/Gulf | native | 846 |
| Central Indian Ocean Islands | sea/bay/gulf | native | 846 |
| Central Indo-Pacific | sea/bay/gulf | native | |
| Central Polynesia | sea/bay/gulf | native | 89710 |
| Chagos | Sea/Bay/Gulf | native | 846 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 846 |
| East African Coral Coast | Sea/Bay/Gulf | native | 846 |
| East Caroline Islands | Sea/Bay/Gulf | native | 846 |
| Eastern Coral Triangle | sea/bay/gulf | native | 846 |
| Eastern Indo-Pacific | sea/bay/gulf | native | 89710 |
| Fiji Islands | Sea/Bay/Gulf | native | 846 |
| Gilbert/Ellis Islands | Sea/Bay/Gulf | native | 846 |
| Gulf of Aden | Sea/Bay/Gulf | native | 84399 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 846 |
| Indian Ocean | Sea/Bay/Gulf | native | 846 |
| Indonesian Sea | Sea/Bay/Gulf | native | 846 |
| Kuroshio Current | Sea/Bay/Gulf | native | 846 |
| Lesser Sunda | Sea/Bay/Gulf | native | 846 |
| Line Islands | Sea/Bay/Gulf | native | 846 |
| Marshall Islands | Sea/Bay/Gulf | native | 89710 |
| Marshall, Gilbert, and Ellis Islands | sea/bay/gulf | native | 89710 |
| New Caledonia | Sea/Bay/Gulf | native | 846 |
| Northern and Central Red Sea | Sea/Bay/Gulf | native | 846 |
| Pacific Ocean | Sea/Bay/Gulf | native | 846 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 846 |
| Red Sea | Sea/Bay/Gulf | native | 846 |
| Red Sea and Gulf of Aden | sea/bay/gulf | native | 846 |
| Seychelles | Sea/Bay/Gulf | native | 89710 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 846 |
| Solomon Sea | Sea/Bay/Gulf | native | 75728 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 846 |
| South China Sea | Sea/Bay/Gulf | native | 846 |
| Southeast Polynesia | sea/bay/gulf | native | 89710 |
| Southern China | Sea/Bay/Gulf | native | 125433 |
| Southern Red Sea | Sea/Bay/Gulf | native | 846 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 846 |
| Sunda Shelf | sea/bay/gulf | native | 846 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 846 |
| Temperate Northern Pacific | sea/bay/gulf | native | 846 |
| Tonga Islands | Sea/Bay/Gulf | native | 89710 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 89710 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 89710 |
| Vanuatu | Sea/Bay/Gulf | native | 846 |
| West Philippine Sea | Sea/Bay/Gulf | native | 846 |
| Western Coral Triangle | sea/bay/gulf | native | 846 |
| Western Indian Ocean | sea/bay/gulf | native | 846 |
| Western Indo-Pacific | sea/bay/gulf | native | 846 |