| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Arabian Sea | Sea/Bay/Gulf | native | 847 |
| Bismarck Sea | Sea/Bay/Gulf | native | 75728 |
| Central Indian Ocean Islands | sea/bay/gulf | native | 847 |
| Central Indo-Pacific | sea/bay/gulf | native | 910 |
| Davao Gulf | Sea/Bay/Gulf | native | 115674 |
| Eastern Coral Triangle | sea/bay/gulf | native | 75728 |
| Eastern Indo-Pacific | sea/bay/gulf | native | 98575 |
| Eastern Philippines | Sea/Bay/Gulf | native | 910 |
| Indian Ocean | Sea/Bay/Gulf | native | 847 |
| Maldives | Sea/Bay/Gulf | native | 847 |
| Mariana Islands | Sea/Bay/Gulf | native | 101074 |
| New Caledonia | Sea/Bay/Gulf | native | 100373 |
| Pacific Ocean | Sea/Bay/Gulf | native | 98575 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 83555 |
| Red Sea | Sea/Bay/Gulf | native | 847 |
| Red Sea and Gulf of Aden | sea/bay/gulf | native | 847 |
| Solomon Sea | Sea/Bay/Gulf | native | 75728 |
| South China Sea | Sea/Bay/Gulf | native | 81116 |
| South India and Sri Lanka | Sea/Bay/Gulf | native | 847 |
| Southeast Polynesia | sea/bay/gulf | native | 98575 |
| Sunda Shelf | sea/bay/gulf | native | 83555 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 83555 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 101074 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 100373 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Vanuatu | Sea/Bay/Gulf | native | 104516 |
| Verde Island Passage | Sea/Bay/Gulf | native | 910 |
| West and South Indian Shelf | sea/bay/gulf | native | 847 |
| West Caroline Islands | Sea/Bay/Gulf | native | 101074 |
| Western Coral Triangle | sea/bay/gulf | native | 910 |
| Western Indo-Pacific | sea/bay/gulf | native | 847 |