| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Central Indo-Pacific | sea/bay/gulf | native | 97639 |
| Central Polynesia | sea/bay/gulf | native | 349 |
| Cocos-Keeling/Christmas Island | Sea/Bay/Gulf | native | 97639 |
| East Caroline Islands | Sea/Bay/Gulf | native | 349 |
| Eastern Coral Triangle | sea/bay/gulf | native | 349 |
| Eastern Indo-Pacific | sea/bay/gulf | native | 349 |
| Fiji Islands | Sea/Bay/Gulf | native | 349 |
| Gilbert/Ellis Islands | Sea/Bay/Gulf | native | 349 |
| Great Australian Bight | Sea/Bay/Gulf | native | 3197 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 61075 |
| Indian Ocean | Sea/Bay/Gulf | native | 349 |
| Indonesian Sea | Sea/Bay/Gulf | native | 75725 |
| Java Transitional | sea/bay/gulf | native | 97639 |
| Lesser Sunda | Sea/Bay/Gulf | native | 349 |
| Line Islands | Sea/Bay/Gulf | native | 349 |
| Mariana Islands | Sea/Bay/Gulf | native | 349 |
| Marshall Islands | Sea/Bay/Gulf | native | 349 |
| Marshall, Gilbert, and Ellis Islands | sea/bay/gulf | native | 349 |
| New Caledonia | Sea/Bay/Gulf | native | 349 |
| Northeast Sulawesi | Sea/Bay/Gulf | native | 75725 |
| Pacific Ocean | Sea/Bay/Gulf | native | 349 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 121724 |
| Papua | Sea/Bay/Gulf | native | 75725 |
| Samar Sea | Sea/Bay/Gulf | native | 821 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 349 |
| South China Sea | Sea/Bay/Gulf | native | 349 |
| Southeast Papua New Guinea | Sea/Bay/Gulf | native | 349 |
| Southern China | Sea/Bay/Gulf | native | 126187 |
| Sunda Shelf | sea/bay/gulf | native | 349 |
| Tañon Strait | Sea/Bay/Gulf | native | 116334 |
| Temperate Australasia | sea/bay/gulf | native | 349 |
| Temperate Northern Pacific | sea/bay/gulf | native | 349 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 349 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 349 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Vanuatu | Sea/Bay/Gulf | native | 349 |
| West Caroline Islands | Sea/Bay/Gulf | native | 349 |
| West Philippine Sea | Sea/Bay/Gulf | native | 349 |
| Western Coral Triangle | sea/bay/gulf | native | 75725 |