| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman | sea/bay/gulf | native | 113429 |
| Bay of Bengal | Sea/Bay/Gulf | native | 97480 |
| Central Indian Ocean Islands | sea/bay/gulf | native | 113408 |
| Central Indo-Pacific | sea/bay/gulf | native | 97480 |
| Central Polynesia | sea/bay/gulf | native | 122 |
| Chagos | Sea/Bay/Gulf | native | 97480 |
| Cocos-Keeling/Christmas Island | Sea/Bay/Gulf | native | 97480 |
| East African Coral Coast | Sea/Bay/Gulf | native | 113530 |
| East Caroline Islands | Sea/Bay/Gulf | native | 122 |
| Eastern Coral Triangle | sea/bay/gulf | native | 122 |
| Eastern Indo-Pacific | sea/bay/gulf | native | 122 |
| Eastern Philippines | Sea/Bay/Gulf | native | 122 |
| Fiji Islands | Sea/Bay/Gulf | native | 122 |
| Gilbert/Ellis Islands | Sea/Bay/Gulf | native | 122 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 97480 |
| Indian Ocean | Sea/Bay/Gulf | native | 122 |
| Java Transitional | sea/bay/gulf | native | 97480 |
| Lesser Sunda | Sea/Bay/Gulf | native | 113374 |
| Line Islands | Sea/Bay/Gulf | native | 122 |
| Maldives | Sea/Bay/Gulf | native | 113408 |
| Mariana Islands | Sea/Bay/Gulf | native | 122 |
| Marquesas | Sea/Bay/Gulf | native | 122 |
| Marquesas - province | Sea/Bay/Gulf | native | 122 |
| Marshall Islands | Sea/Bay/Gulf | native | 122 |
| Marshall, Gilbert, and Ellis Islands | sea/bay/gulf | native | 122 |
| New Caledonia | Sea/Bay/Gulf | native | 122 |
| Northern Bay of Bengal | Sea/Bay/Gulf | native | 122 |
| Pacific Ocean | Sea/Bay/Gulf | native | 122 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 85002 |
| Phoenix/Tokelau/Northern Cook Islands | Sea/Bay/Gulf | native | 113374 |
| Rapa-Pitcairn | Sea/Bay/Gulf | native | 113374 |
| Sahul Shelf | sea/bay/gulf | native | 97480 |
| Samoa Islands | Sea/Bay/Gulf | native | 122 |
| Seychelles | Sea/Bay/Gulf | native | 800 |
| Society Islands | Sea/Bay/Gulf | native | 97480 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 122 |
| South China Sea | Sea/Bay/Gulf | native | 122 |
| South India and Sri Lanka | Sea/Bay/Gulf | native | 113374 |
| Southeast Polynesia | sea/bay/gulf | native | 122 |
| Southern Cook/Austral Islands | Sea/Bay/Gulf | native | 122 |
| Southern Palawan | Sea/Bay/Gulf | native | 122 |
| Spratly Islands | Sea/Bay/Gulf | native | 631 |
| Sunda Shelf | sea/bay/gulf | native | 122 |
| Temperate Northern Pacific | sea/bay/gulf | native | 800 |
| Tonga Islands | Sea/Bay/Gulf | native | 122 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 122 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 122 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Vanuatu | Sea/Bay/Gulf | native | 122 |
| Verde Island Passage | Sea/Bay/Gulf | native | 115900 |
| West and South Indian Shelf | sea/bay/gulf | native | 113374 |
| West Caroline Islands | Sea/Bay/Gulf | native | 100752 |
| West Philippine Sea | Sea/Bay/Gulf | native | 122 |
| Western Coral Triangle | sea/bay/gulf | native | 122 |
| Western Indian Ocean | sea/bay/gulf | native | 113530 |
| Western Indo-Pacific | sea/bay/gulf | native | 122 |