| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 848 |
| Arabian Sea | Sea/Bay/Gulf | native | 848 |
| Bay of Bengal | Sea/Bay/Gulf | native | 848 |
| Bight of Sofala/Swamp Coast | Sea/Bay/Gulf | native | 848 |
| Cargados Carajos/Tromelin Island | Sea/Bay/Gulf | native | 848 |
| Central Indo-Pacific | sea/bay/gulf | native | |
| Central Somali Coast | Sea/Bay/Gulf | native | 848 |
| Delagoa | Sea/Bay/Gulf | native | 848 |
| East African Coral Coast | Sea/Bay/Gulf | native | 848 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 848 |
| Indian Ocean | Sea/Bay/Gulf | native | 848 |
| Indonesian Sea | Sea/Bay/Gulf | native | 848 |
| Kuroshio Current | Sea/Bay/Gulf | native | 848 |
| Mascarene Islands | Sea/Bay/Gulf | native | 848 |
| New Caledonia | Sea/Bay/Gulf | native | 99588 |
| North Australian Shelf | Sea/Bay/Gulf | native | 848 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 848 |
| Northern and Central Red Sea | Sea/Bay/Gulf | native | 848 |
| Northern Monsoon Current Coast | Sea/Bay/Gulf | native | 848 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 848 |
| Pacific Ocean | Sea/Bay/Gulf | native | 848 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 848 |
| Persian Gulf | Sea/Bay/Gulf | native | 107953 |
| Red Sea | Sea/Bay/Gulf | native | 848 |
| Red Sea and Gulf of Aden | sea/bay/gulf | native | 848 |
| Seychelles | Sea/Bay/Gulf | native | 848 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 848 |
| Somali/Arabian | sea/bay/gulf | native | 107953 |
| South China Sea | Sea/Bay/Gulf | native | 848 |
| Southeast Madagascar | Sea/Bay/Gulf | native | 848 |
| Southern China | Sea/Bay/Gulf | native | 121111 |
| Southern Red Sea | Sea/Bay/Gulf | native | 848 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 848 |
| Sunda Shelf | sea/bay/gulf | native | 848 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 848 |
| Temperate Northern Pacific | sea/bay/gulf | native | 848 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 99588 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| West Philippine Sea | Sea/Bay/Gulf | native | 848 |
| Western and Northern Madagascar | Sea/Bay/Gulf | native | 848 |
| Western Coral Triangle | sea/bay/gulf | native | 848 |
| Western Indian Ocean | sea/bay/gulf | native | 848 |
| Western Indo-Pacific | sea/bay/gulf | native | 107953 |